This Key Event Relationship is licensed under the Creative Commons BY-SA license. This license allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. If you remix, adapt, or build upon the material, you must license the modified material under identical terms.
Relationship: 2729
Title
Increase chromosomal aberrations leads to Increase,miRNA levels
Upstream event
Downstream event
AOPs Referencing Relationship
| AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding | Point of Contact | Author Status | OECD Status |
|---|---|---|---|---|---|---|
| Alcohol Induced DNA damage and mutations leading to Metastatic Breast Cancer | non-adjacent | High | High | Agnes Aggy (send email) | Under development: Not open for comment. Do not cite | Under Development |
Taxonomic Applicability
| Term | Scientific Term | Evidence | Link |
|---|---|---|---|
| human | Homo sapiens | High | NCBI |
Sex Applicability
| Sex | Evidence |
|---|---|
| Mixed | High |
Life Stage Applicability
| Term | Evidence |
|---|---|
| All life stages | Not Specified |
KER :Increased, chromosomal aberration leads to microRNA expression, increased
Upstream event: increased, chromosomal aberration
Downstream event: increased miRNA expression
Animal studies,cell line studies and human studies were searched,
| ID | Experimental Design | Species | Upstream Observation | Downstream Observation | Citation (first author, year) | Notes |
|---|
| Title | First Author | Biological Plausibility |
Dose Concordance |
Temporal Concordance |
Incidence Concordance |
|---|
Biological Plausibility
Dose Concordance Evidence
Temporal Concordance Evidence
Incidence Concordance Evidence
Uncertainties and Inconsistencies
The contribution of microRNAs (miR) to the pathogenesis of mantle cell lymphoma (MCL) is not well known. The expression of 86 mature miRs mapped to frequently altered genomic regions in MCL in CD5+ /CD5 normal B cells, reactive lymph nodes, and purified tumor cells of 17 leukemic MCL, 12 nodal MCL, and 8MCL cell lines were investigated. Genomic alterations of the tumors were studied by single nucleotide polymorphism arrays and comparative genomic hybridization. Leukemic and nodal tumors showed a high number of differentially expressed miRs compared with purified normal B cells, but only some of them were commonly deregulated in both tumor types. An unsupervised analysis of miR expression profile in purified leukemic MCL cells revealed two clusters of tumors characterized by different mutational status of the immunoglobulin genes, proliferation signature, and number of genomic alterations. The expression of most miRs was not related to copy number changes in their respective chromosomal loci. Only the levels of miRs included in the miR-17-92 cluster were significantly related to genetic alterations at 13q31. Moreover, overexpression of miR-17-5p/miR-20a from this cluster was associated with high MYC mRNA levels in tumors with a more aggressive behavior. In conclusion, the miR expression pattern of MCL is deregulated in comparison with normal lymphoid cells and distinguishes two subgroups of tumors with different biological features.
| Modulating Factor (MF) | MF Specification | Effect(s) on the KER | Reference(s) |
|---|---|---|---|
|
UV rays,cisplatin, doxorubicin, IR |
Impaired DNA repair | Altered miRNA expression |
Pothof et al., 2009,Galluzzi et al., 2010, Saleh et.al.,2011;Suzuki et al.,2009 |
|
Method/ measurement reference |
Reliability |
Strength of evidence |
Assay fit for purpose |
Repeatability/ reproducibility |
Direct measure |
|
|
Human |
Microarray, CGH analysis (dehan et al., 2007) |
+ |
Strong |
Yes |
Yes |
Yes |
|
Human cell line and blood samples |
Northern blotting (Calin et al., 2004) |
+ |
Strong |
Yes |
Yes |
Yes |
|
Cytogenetic techniques (Lionetti M et al., 2009 ; Min DJ et al., 2013 ;Huang JJ et al., 2012 ; Pichiorri F, et al., 2011; Roccaro AM et al., 2009; Gao X et al., 2009 ; Corthals SL et al.,2010 ; Pichiorri F et al., 2008 ; Yang RF et al., 2010; Rio-Machin A et al., 2013 ; Gutiérrez NC et al., 2010 ; Kuehl WM et al., 2012 ; Pichiorri F et al., 2010 ; Gatt ME et al., 2011 ; Zhang Y-K et al., 2011 ;Misiewicz-Krzeminska I et al., 2013;Wong KY et al., 2011 ;Chim CS et al., 2010) |
+ |
Strong |
Yes |
Yes |
Yes |
Response-response Relationship
Detailed investigation of the 13q14.3 deletions showed that both members of an miRNA cluster, miR-15a and miR-16-1, are deleted or downregulated in approximately 68% of CLL cases as compared with healthy donors (Calin, G.A., et al. 2002). Furthermore, a rare mutation lowering the expression of these genes was identified in two CLL patients including one from a family with individuals having CLL and breast cancer, and was found to be associated with the loss of the normal allele in the leukemic cells (Calin, G.A., et al. 2005). It was shown that the levels of both miR-15 and miR-16 inversely correlate with the BCL-2 protein expression and that BCL-2 repression by these miRNAs induces apoptosis in leukemia cells (Cimmino, A., et al. 2005).
Levels of miR-16 were decreased in NZB lymphoid tissue, and exogenous miR-16 delivered to an NZB malignant B-1 cell line resulted in cell cycle alterations and increased apoptosis. Linkage of the miR-15a/miR-16-1 complex to the development of CLL in this spontaneous mouse model suggests that the altered expression of these genes is the molecular lesion in CLL (Raveche, E.S., et al. 2007).
The only miRNA found to be overexpressed in any type of solid tumor analyzed (breast, colon, lung, prostate, stomach, and endocrine pancreas tumors, glioblastomas, and uterine leiomyomas) is miR-21 (Volinia, S., et al. 2006, Ciafre, S.A., et al. 2005; . Krichevsky et al.,2003; Wang, T., et al. 2007). This gene is located in the 3′UTR of the vacuole membrane protein 1 (VMP1) gene at chromosome 17q23.2, a region frequently found amplified in neuroblastomas and breast, colon, and lung cancers. Knockdown of miR-21 in glioblastoma cell lines induces a caspase-mediated apoptosis, further supporting the oncogenic role of this miRNA (Chan, et al.,2005).
Time-scale
Studies performed in solid cancer cell lines showed that miR-16 negatively regulated cellular growth and cell cycle progression. miR-16–downregulated transcripts were enriched with genes whose silencing by small interfering RNAs causes an accumulation of cells in G0/G1. Simultaneous silencing of these genes was more effective at blocking cell cycle progression than was disruption of the individual genes. Thus, miR-16 coordinately regulates targets that may act in concert to control cell cycle progression (Linsley, P.S., et al. 2007)
Known Feedforward/Feedback loops influencing this KER
Not mentioned.
Not specific through any particular life stage or gender